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ABOUT THIS RECORD

ID: MNEST002005
species: Picea sitchensis
miRNA family: MIR535
source: miRNEST

Taxonomy by NCBI:
Picea sitchensis Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGACAACGAGAGAGAGCACGC

miRNA*
 GTGCTCTCTGCTTGTAGTCAGC

mismatches: 1
bulges: 1
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pre-miRNA
 CTATTCCATTGCTGACAACGAGAGAGAGCACGCCTGTATTCTCTTATATGAATTTTGCATATGTGGGCGTCCATGCGTGCTCTCTGCTTGTAGTCAGCAAA
GCGAC

dot-bracket secondary structure
).......((((((((.((((((((((((((((.((.((.(((.((((((.......)))))).))).)).)).))))))))))).))))).)))))))).
.....


SIMILARITIES
miRBase pab-MIR535: 6.0E-55

PMRD vvi-miR535c: 2.0E-5

microPC miR535: 2.0E-42		UniProt no hits

RFAM 5MIR535: 0.0004		most similar mature miRNAs

Identical with: pab-MIR535 from miRBase (MNEST039387), miR535 from microPC

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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