ABOUT THIS RECORDspecies: Picea sitchensis
miRNA family: miR3704
source: miRNEST
Taxonomy by NCBI:
Picea sitchensis Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGTCTAGGTGGAGTTGGAAAAA miRNA* TTTCCACTCCTCCCAGACCCA mismatches: 2 bulges: 1 |
pre-miRNA
GATAAAATAGGGATGTGTAGTGAAGGCAATAGGTCTAGGTGGAGTTGGAAAAACTGTAACAATGCCTATATCACATCAGATCAGATTATATCATGAGTGA
CTGCATGAGTTTTTCCACTCCTCCCAGACCCAGTGGCCTTAAAACTACATGACATCCCTG
dot-bracket secondary structure
.......((((((((((((((.(((((....(((((.((.(((((.(((((((((......((((.....((((.((((((........))).)))))))
..)))).)))))))))))))).)).))))).....)))))...)))))...)))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GATAAAATAGGGATGTGTAGTGAAGGCAATAGGTCTAGGTGGAGTTGGAAAAACTGTAACAATGCCTATATCACATCAGATCAGATTATATCATGAGTGA
CTGCATGAGTTTTTCCACTCCTCCCAGACCCAGTGGCCTTAAAACTACATGACATCCCTG
dot-bracket secondary structure
.......((((((((((((((.(((((....(((((.((.(((((.(((((((((......((((.....((((.((((((........))).)))))))
..)))).)))))))))))))).)).))))).....)))))...)))))...)))))))))
SIMILARITIES| miRBase pab-MIR3704: 6e-53 PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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