ABOUT THIS RECORDspecies: Pinus banksiana
miRNA family: MIRf160
source: miRNEST
Taxonomy by NCBI:
Pinus banksiana Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTGCAGCTGCAGAAGCTGCAG miRNA* TTTGGCTACTGCAGCTGCGGCA mismatches: 3 bulges: 0 |
pre-miRNA
CACACCCTGACCTTTGGCTACTGCAGCTGCGGCAAATCTAGTCTATTACGATCCTACTGGTTGTGCCACACCTTGACCTTTGGCTGCTGCAGCTGCAGAA
GCTGCAGTTGATGAAG
dot-bracket secondary structure
........(((...(((((.((((((((((((((..((..(((...(((((((.....))))))).........)))....)).)))))))))))))).)
))))..))).......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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CACACCCTGACCTTTGGCTACTGCAGCTGCGGCAAATCTAGTCTATTACGATCCTACTGGTTGTGCCACACCTTGACCTTTGGCTGCTGCAGCTGCAGAA
GCTGCAGTTGATGAAG
dot-bracket secondary structure
........(((...(((((.((((((((((((((..((..(((...(((((((.....))))))).........)))....)).)))))))))))))).)
))))..))).......
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
