ABOUT THIS RECORDspecies: Pinus banksiana
miRNA family: MIR157
source: miRNEST
Taxonomy by NCBI:
Pinus banksiana Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATGACAGAAGAGAGAGAGCAC miRNA* GCTCCTTTTTGCGTCGTCA mismatches: 4 bulges: 2 |
pre-miRNA
GGCTGTTGTGATGACAGAAGAGAGAGAGCACGCCCAGGTGATGGCAGGTAAGGCAGGGCATATCTCCCCATAGGAAATTTCTCACCCAGTACACCTATCA
GACGTTTCTCTTCTTGGCTTCCGGAGTTGGCCAATGAATCTAATGAATTCTTCCGCCGCCGTTCATTGTGCCCCGCCAACCTCCTTCTGCAGCTCCTTTT
TGCGTCGTCAAATTCCG
dot-bracket secondary structure
((..(((.(((((((...((((((.((((.....((((....((.((((..(((.((((((((......)))((((((.(((.................)
)).)))))).(((((((((.........)))))).)))..((((((((............))))))))))))).))).)))))).))))..)))))))))
)..)))))))))).)).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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GGCTGTTGTGATGACAGAAGAGAGAGAGCACGCCCAGGTGATGGCAGGTAAGGCAGGGCATATCTCCCCATAGGAAATTTCTCACCCAGTACACCTATCA
GACGTTTCTCTTCTTGGCTTCCGGAGTTGGCCAATGAATCTAATGAATTCTTCCGCCGCCGTTCATTGTGCCCCGCCAACCTCCTTCTGCAGCTCCTTTT
TGCGTCGTCAAATTCCG
dot-bracket secondary structure
((..(((.(((((((...((((((.((((.....((((....((.((((..(((.((((((((......)))((((((.(((.................)
)).)))))).(((((((((.........)))))).)))..((((((((............))))))))))))).))).)))))).))))..)))))))))
)..)))))))))).)).
SIMILARITIES| miRBase sbi-MIR156d: 0.000003 PMRD sbi-miR156d: 0.000003 microPC miR157: 0.0007 | UniProt sp|Q7XT42|SPL7_ORYSJ: 0.000000004 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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