ABOUT THIS RECORDspecies: Pinus banksiana
miRNA family: MIR408
source: miRNEST
Taxonomy by NCBI:
Pinus banksiana Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCACTGCCTCTTCCCTGGCT miRNA* ACAGGGATGAGTTAGGGCATG mismatches: 4 bulges: 0 |
pre-miRNA
AGGCAATAGAGACAGGGATGAGTTAGGGCATGGGAGTTGCATATGCAGAAACGTCTGCTTCTGCCATTCTCATGCACTGCCTCTTCCCTGGCTCGCTTCT
T
dot-bracket secondary structure
.(((....(((.((((((.(((.(((.((((((((((.(((...(((((....)))))...))).)))))))))).))).))).)))))).))))))...
.
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
AGGCAATAGAGACAGGGATGAGTTAGGGCATGGGAGTTGCATATGCAGAAACGTCTGCTTCTGCCATTCTCATGCACTGCCTCTTCCCTGGCTCGCTTCT
T
dot-bracket secondary structure
.(((....(((.((((((.(((.(((.((((((((((.(((...(((((....)))))...))).)))))))))).))).))).)))))).))))))...
.
SIMILARITIES| miRBase pta-MIR408: 7e-39 PMRD pta-miR408: 7e-39 microPC miR408: 0.0000003 | UniProt no hits RFAM MIR408: 0.000001 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
