ABOUT THIS RECORDspecies: Pinus banksiana
miRNA family: MIR414
source: miRNEST
Taxonomy by NCBI:
Pinus banksiana Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTTCATCATCATCATCTTGT miRNA* AAGATGATATCATGATGAACATA mismatches: 4 bulges: 2 |
pre-miRNA
AAGGCTGGCAAGATGATATCATGATGAACATACATATTGGAACCACCCTCTTCAGTTTCTTCTTCATATATCCAGACCTCAAGATGGCTAACATCGTCTT
CATTACGAGCTGATAAAATAATCAAGTCAAAAGGTTTAATTGTCATGTCTTCGATTTCATCTTCATCATCATCATCTTGTTCTACA
dot-bracket secondary structure
......(((((((((((...((((((((((((((.....(((((....((((.((..(((.............))).)).))))(((((....((((...
....))))..((((......)))))))))...)))))...))).))))..............))))))).))))))))))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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AAGGCTGGCAAGATGATATCATGATGAACATACATATTGGAACCACCCTCTTCAGTTTCTTCTTCATATATCCAGACCTCAAGATGGCTAACATCGTCTT
CATTACGAGCTGATAAAATAATCAAGTCAAAAGGTTTAATTGTCATGTCTTCGATTTCATCTTCATCATCATCATCTTGTTCTACA
dot-bracket secondary structure
......(((((((((((...((((((((((((((.....(((((....((((.((..(((.............))).)).))))(((((....((((...
....))))..((((......)))))))))...)))))...))).))))..............))))))).))))))))))).....
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q9P775|YBEG_SCHPO: 0.0000004 RFAM mir-598: 0.0007 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
