ABOUT THIS RECORDspecies: Pinus taeda
miRNA family: MIR1313
source: miRNEST
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACTGAAATTATTGTTGG miRNA* AACAATAATTTCAGTGGTAGA mismatches: 2 bulges: 0 |
pre-miRNA
ATCCCCATGAGTCTTCCAGATCGATGGAAGTCTTCCACTGAAATTATTGTTGGATAAATACACCCATGCAACTTGGTTATTGCCCAGTAGATCCCCCACCA
TGCCATGTGTTGCAACCCTGCAACTAGGTTAGACTGGGGATACACTGTAGGATACCATACCACGGCAGTATACATCCATGAATTGCAGGTGTTATTTCGA
ACAATAATTTCAGTGGTAGAATACCATCCGGAAGAGGAGCAACCAAAA
dot-bracket secondary structure
)..........((((((.....(((((...(((.(((((((((((((((((.((.....(((((..(((((..(((.(((((((((((..((((((.....
.(((....((((((....))))))..)))......))))))..))))..((........))..))))))).....)))....))))))))))....)).)
)))))))))))))))).)))...))))).))))))((.....))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATCCCCATGAGTCTTCCAGATCGATGGAAGTCTTCCACTGAAATTATTGTTGGATAAATACACCCATGCAACTTGGTTATTGCCCAGTAGATCCCCCACCA
TGCCATGTGTTGCAACCCTGCAACTAGGTTAGACTGGGGATACACTGTAGGATACCATACCACGGCAGTATACATCCATGAATTGCAGGTGTTATTTCGA
ACAATAATTTCAGTGGTAGAATACCATCCGGAAGAGGAGCAACCAAAA
dot-bracket secondary structure
)..........((((((.....(((((...(((.(((((((((((((((((.((.....(((((..(((((..(((.(((((((((((..((((((.....
.(((....((((((....))))))..)))......))))))..))))..((........))..))))))).....)))....))))))))))....)).)
)))))))))))))))).)))...))))).))))))((.....))....
SIMILARITIES| miRBase pta-MIR1313: 1.0E-116 PMRD pta-miR1313: 1.0E-116 microPC miR1313: 3.0E-65 | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: pta-MIR1313 from miRBase (MNEST039448), pta-miR1313 from PMRD |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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