ABOUT THIS RECORDspecies: Pinus taeda
miRNA family: MIR159
source: miRNEST
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTTGGATTGAAGGGAGCTCCC miRNA* GAGCTGATTTTGTCCAGGA mismatches: 3 bulges: 2 |
pre-miRNA
GGGTTGATGTGTGAATGATGCGGGAGCTGATTTTGTCCAGGAAATGTCTTTTCCTTGGATTGAAGGGAGCTCCCTTATGTAGCATACATTTTTC
dot-bracket secondary structure
.((..((((((((....(((.(((((((..(((.((((((((((.....))))).))))).)))...))))))).)))....))))))))..))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GGGTTGATGTGTGAATGATGCGGGAGCTGATTTTGTCCAGGAAATGTCTTTTCCTTGGATTGAAGGGAGCTCCCTTATGTAGCATACATTTTTC
dot-bracket secondary structure
.((..((((((((....(((.(((((((..(((.((((((((((.....))))).))))).)))...))))))).)))....))))))))..))
SIMILARITIES| miRBase pta-MIR159c: 4e-43 PMRD pta-miR159c: 4e-43 microPC miR319: 0.000004 | UniProt no hits RFAM MIR159: 0.00008 | most similar mature miRNAs |
Identical with: pta-miR159c from PMRD (MNEST051555) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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