miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Back to search results
ABOUT THIS RECORD
ID:
MNEST002057
species:
Pinus taeda
miRNA family:
MIR396
source:
miRNEST
Taxonomy by NCBI:
Pinus taeda
Pinus
Pinus
Pinaceae
Coniferales
Coniferopsida
Coniferophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTCCACAGCTTTCTTGAACTT
miRNA*
GTTCAAGAAAACTGTGGGAAA
mismatches:
1
bulges:
0
View larger
pre-miRNA
TTGTCATACTT
TTCCACAGCTTTCTTGAACTT
TACGTGTACGGGACGAGGAGATTCTGATTTCTACGTCTGCGATTAAA
GTTCAAGAAAACTGTGGGAAA
GCATGGTA
dot-bracket secondary structure
...((((.(((
((((((((.((((((((((((
((..(((...(((((.((((((....)))))).))))))))..))))
)))))))))).))))))))))
).))))..
SIMILARITIES
miRBase
pta-MIR396
:
1e-56
PMRD
pta-miR396
:
1e-56
microPC
miR396
:
3e-44
UniProt
no hits
RFAM
MIR396: 2e-52
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record