ABOUT THIS RECORDspecies: Pinus taeda
miRNA family: MIR396
source: miRNEST
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCAAGAAAACTGTGGGAAAG miRNA* TTTCCACAGCTTTCTTGAACT mismatches: 1 bulges: 0 |
pre-miRNA
TGTCATACTTTTCCACAGCTTTCTTGAACTTTACGTGTACGGGACGAGGAGATTCTGATTTCTACGTCTGCGATTAAAGTTCAAGAAAACTGTGGGAAAG
CATGGT
dot-bracket secondary structure
..((((.(((((((((((.((((((((((((((..(((...(((((.((((((....)))))).))))))))..)))))))))))))).)))))))))))
.)))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGTCATACTTTTCCACAGCTTTCTTGAACTTTACGTGTACGGGACGAGGAGATTCTGATTTCTACGTCTGCGATTAAAGTTCAAGAAAACTGTGGGAAAG
CATGGT
dot-bracket secondary structure
..((((.(((((((((((.((((((((((((((..(((...(((((.((((((....)))))).))))))))..)))))))))))))).)))))))))))
.)))).
SIMILARITIES| miRBase pta-MIR396: 2e-55 PMRD pta-miR396: 2e-55 microPC miR396: 3e-44 | UniProt no hits RFAM MIR396: 7e-52 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
