ABOUT THIS RECORDspecies: Pinus taeda
miRNA family: MIR408
source: miRNEST
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCACTGCCTCTTCCCTGGCT miRNA* ACAGGGACGAGTTAGGGCATG mismatches: 4 bulges: 0 |
pre-miRNA
AGGCAATCGAGACAGGGACGAGTTAGGGCATGGGAGTTGCATATGCAGAAACGTCTGCTTCTGCCATTCTTATGCACTGCCTCTTCCCTGGCTCACTTCT
C
dot-bracket secondary structure
........(((.((((((.(((.(((.((((((((((.(((...(((((....)))))...))).)))))))))).))).))).)))))).)))......
.
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGGCAATCGAGACAGGGACGAGTTAGGGCATGGGAGTTGCATATGCAGAAACGTCTGCTTCTGCCATTCTTATGCACTGCCTCTTCCCTGGCTCACTTCT
C
dot-bracket secondary structure
........(((.((((((.(((.(((.((((((((((.(((...(((((....)))))...))).)))))))))).))).))).)))))).)))......
.
SIMILARITIES| miRBase pta-MIR408: 1e-43 PMRD pta-miR408: 1e-43 microPC miR408: 0.00002 | UniProt no hits RFAM MIR408: 0.00009 | most similar mature miRNAs |
Identical with: pta-MIR408 from miRBase (MNEST039428) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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