ABOUT THIS RECORDspecies: Pinus taeda
miRNA family: MIR950
source: miRNEST
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCAGGTCCTCGGTGGTTTAT miRNA* AAACCATCGTGGAGCCGATG mismatches: 1 bulges: 2 |
pre-miRNA
AGGGGAAGAGGTTTGGAAGGTGATCTTTACATCAGGTCCTCGGTGGTTTATTGCTCATCGTTTGTTTATAATAAACCATCGTGGAGCCGATGAAAAGAGC
ACCTCCGCCTTCGTTTACAT
dot-bracket secondary structure
..(((..((((..((((.((((.(((((.((((.(((((.(((((((((((((..((.....))....))))))))))))).))).)))))).))))).)
))))))).)))).)))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGGGGAAGAGGTTTGGAAGGTGATCTTTACATCAGGTCCTCGGTGGTTTATTGCTCATCGTTTGTTTATAATAAACCATCGTGGAGCCGATGAAAAGAGC
ACCTCCGCCTTCGTTTACAT
dot-bracket secondary structure
..(((..((((..((((.((((.(((((.((((.(((((.(((((((((((((..((.....))....))))))))))))).))).)))))).))))).)
))))))).)))).)))....
SIMILARITIES| miRBase pta-MIR950a: 4e-47 PMRD pta-miR950a: 4e-47 microPC miR950: 2e-27 | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: miR950 from microPC (MNEST045061) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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