ABOUT THIS RECORDspecies: Pinus taeda
miRNA family: MIR157
source: miRNEST
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGATAGAGAGCACA miRNA* TGGTCTCCATGATTCTGTCATC mismatches: 3 bulges: 1 |
pre-miRNA
GTTGGTGTCGATGACAGAAGATAGAGAGCACATCCGCTCACATGCCGGGACTCTGCGTTTGAGGTGTATGTGGTCTCCATGATTCTGTCATCAA
dot-bracket secondary structure
.........((((((((((.((.((((.(((((.((((((.((((.((...)).)))).))).))).))))).)))).))..))))))))))..
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GTTGGTGTCGATGACAGAAGATAGAGAGCACATCCGCTCACATGCCGGGACTCTGCGTTTGAGGTGTATGTGGTCTCCATGATTCTGTCATCAA
dot-bracket secondary structure
.........((((((((((.((.((((.(((((.((((((.((((.((...)).)))).))).))).))))).)))).))..))))))))))..
SIMILARITIES| miRBase pta-MIR156a: 7e-42 PMRD pta-miR156a: 7e-42 microPC miR157: 2e-39 | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: pta-miR156a from PMRD (MNEST051551) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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