ABOUT THIS RECORDspecies: Pinus taeda
miRNA family: MIR477
source: miRNEST
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCTCCTTCAAAGGCTGCTGG miRNA* AGGTGCCATTGAAGGAGAAAT mismatches: 3 bulges: 0 |
pre-miRNA
CTCGATCAGCTCAACGGCAGATTCTCCTTCAAAGGCTGCTGGAAATCCACATACATTGCTGCACATTGGCCCATGCATGTCCTCCCTCAGGTGCCATTGA
AGGAGAAATTTGTTGAATGTTCTGGAT
dot-bracket secondary structure
((.((.((..(((((((....(((((((((((.(((..((((......((((.(((.((((.....))))..))).))))......))))..))).))))
)))))))..))))))).)).)).))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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CTCGATCAGCTCAACGGCAGATTCTCCTTCAAAGGCTGCTGGAAATCCACATACATTGCTGCACATTGGCCCATGCATGTCCTCCCTCAGGTGCCATTGA
AGGAGAAATTTGTTGAATGTTCTGGAT
dot-bracket secondary structure
((.((.((..(((((((....(((((((((((.(((..((((......((((.(((.((((.....))))..))).))))......))))..))).))))
)))))))..))))))).)).)).))..
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
