ABOUT THIS RECORDspecies: Pinus taeda
miRNA family: miR3704
source: miRNEST
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGTCTCGGTGGAGTTGGAAAA miRNA* TTCCCCCTCTCCGAGACCCG mismatches: 2 bulges: 1 |
pre-miRNA
GGCAAAACATGGATGTGTAGTGAAGGTCAAAGGTCTCGGTGGAGTTGGAAAAATTGTAACAGTTCACATATCCACATAGCATCAGATGACACCGTGAGTT
ACTGCCAGGTTTTTCCCCCTCTCCGAGACCCGATGACCTTAAAACTACATAACATCCCTG
dot-bracket secondary structure
.......((.(((((((((((.(((((((..((((((((.((((..(((((((((....((((((((..........................))))...
))))...)))))))))..))))))))))))...)))))))...)))))...)))))).))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GGCAAAACATGGATGTGTAGTGAAGGTCAAAGGTCTCGGTGGAGTTGGAAAAATTGTAACAGTTCACATATCCACATAGCATCAGATGACACCGTGAGTT
ACTGCCAGGTTTTTCCCCCTCTCCGAGACCCGATGACCTTAAAACTACATAACATCCCTG
dot-bracket secondary structure
.......((.(((((((((((.(((((((..((((((((.((((..(((((((((....((((((((..........................))))...
))))...)))))))))..))))))))))))...)))))))...)))))...)))))).))
SIMILARITIES| miRBase pab-MIR3704: 0.000008 PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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