ABOUT THIS RECORDspecies: Pinus taeda
miRNA family: MIRf1281
source: miRNEST
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGTATTTGGTTGCTGAGAAGG miRNA* TTGTTACAACCAAACACAAT mismatches: 5 bulges: 1 |
pre-miRNA
TTTCTACTCTGCGTATTTGGTTGCTGAGAAGGTGATTGTTACAACCAAACACAATGATGATGA
dot-bracket secondary structure
............((.((((((((.(((.((.....)).))))))))))).))...........
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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TTTCTACTCTGCGTATTTGGTTGCTGAGAAGGTGATTGTTACAACCAAACACAATGATGATGA
dot-bracket secondary structure
............((.((((((((.(((.((.....)).))))))))))).))...........
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|P51819|HSP83_IPONI: 0.0002 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
