ABOUT THIS RECORDspecies: Poncirus trifoliata
miRNA family: miR164c
source: miRNEST
SEQUENCE & STRUCTURE| miRNA CATGTGCCCTTCTTCCCCATC miRNA* TGGAGAAGCAGGGCACGTGCA mismatches: 2 bulges: 0 |
pre-miRNA
TAATTGTGGCATCATCAGCATGAGAAGGTGTGTGTAGAGCAAGATGGAGAAGCAGGGCACGTGCATTACTAACTCAACCGCACATACATCTACTAACAAA
AATTAATTAATCCACACATTTTGAAGAAACCAAATCAAGAAGCAGGAGGCTCTTTCTGTTGTTATAGCTCAGTCATGAGTTGAGTTATTTCTTCATGTGC
CCTTCTTCCCCATCATGACCGCGGCACCTTGTGCGTGTGTGTGTGTGTATCATCA
dot-bracket secondary structure
....((..(((((((..(((((..((((((((((.....((.(((((.((((.((((((((((......(((((((((((.........(((.((((((.
..........(((.....((((((..........))))))....)))...........)))))))))........)).)))))))))......)))))))
))).)))).))))).))..))).)))))))...)))))..))).))))..))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TAATTGTGGCATCATCAGCATGAGAAGGTGTGTGTAGAGCAAGATGGAGAAGCAGGGCACGTGCATTACTAACTCAACCGCACATACATCTACTAACAAA
AATTAATTAATCCACACATTTTGAAGAAACCAAATCAAGAAGCAGGAGGCTCTTTCTGTTGTTATAGCTCAGTCATGAGTTGAGTTATTTCTTCATGTGC
CCTTCTTCCCCATCATGACCGCGGCACCTTGTGCGTGTGTGTGTGTGTATCATCA
dot-bracket secondary structure
....((..(((((((..(((((..((((((((((.....((.(((((.((((.((((((((((......(((((((((((.........(((.((((((.
..........(((.....((((((..........))))))....)))...........)))))))))........)).)))))))))......)))))))
))).)))).))))).))..))).)))))))...)))))..))).))))..))...
SIMILARITIES| miRBase ctr-MIR164: 9e-118 PMRD csi-miR164: 2e-87 microPC miR164: 4e-92 | UniProt no hits RFAM MIR164: 0.000000000000001 | most similar mature miRNAs |
Identical with: miR164 from microPC (MNEST046639) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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