ABOUT THIS RECORDspecies: Populus deltoides
miRNA family: MIRf1049
source: miRNEST
Taxonomy by NCBI:
Populus deltoides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCCCAGGATCATGTCATGGTG miRNA* TCATGATAGGGAATTGGGAGT mismatches: 3 bulges: 2 |
pre-miRNA
ACCATCATAGTACATGTTCATCCATGTACCAGCCCAGGATCATGTCATGGTGTGTGCATATGCATGGATCTGGTATACATGCATGCATACATGCCTGTAG
ATATCATCACATCATGATAGGGAATTGGGAGTAGGCAGATTTTTAGAATGCCCATTATAT
dot-bracket secondary structure
.........(((((((......)))))))...(((((..((.(((((((((((((((....)))).((..(((((((((.(((((....))))).)))).
.))))))))))))))))))..)).)))))....((((..((....)).))))........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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ACCATCATAGTACATGTTCATCCATGTACCAGCCCAGGATCATGTCATGGTGTGTGCATATGCATGGATCTGGTATACATGCATGCATACATGCCTGTAG
ATATCATCACATCATGATAGGGAATTGGGAGTAGGCAGATTTTTAGAATGCCCATTATAT
dot-bracket secondary structure
.........(((((((......)))))))...(((((..((.(((((((((((((((....)))).((..(((((((((.(((((....))))).)))).
.))))))))))))))))))..)).)))))....((((..((....)).))))........
SIMILARITIES| miRBase no hits PMRD ptc-miRf11143-akr: 1e-50 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
