ABOUT THIS RECORDspecies: Populus deltoides
miRNA family: MIRf36
source: miRNEST
Taxonomy by NCBI:
Populus deltoides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GACCGGTTTCGGTTCGGTTTG miRNA* AACCGAACCCAAACCGGTCCA mismatches: 1 bulges: 0 |
pre-miRNA
AGGCAAAAAAAAAAGGGACCCAAACCGAACCCAAACCGGTCCAAACCGACCGGTTTCGGTTCGGTTTGGGTCCAGTTTTTTAGGTCC
dot-bracket secondary structure
.(((..((((((...((((((((((((((((.(((((((((......))))))))).))))))))))))))))..))))))..))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGGCAAAAAAAAAAGGGACCCAAACCGAACCCAAACCGGTCCAAACCGACCGGTTTCGGTTCGGTTTGGGTCCAGTTTTTTAGGTCC
dot-bracket secondary structure
.(((..((((((...((((((((((((((((.(((((((((......))))))))).))))))))))))))))..))))))..))).
SIMILARITIES| miRBase no hits PMRD ptc-miRf12125-akr: 0.000000000004 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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