ABOUT THIS RECORDspecies: Populus nigra
miRNA family: MIRf907
source: miRNEST
Taxonomy by NCBI:
Populus nigra Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCAGCAGGTTTTGCATGCTCT miRNA* GGGCATGCACTCTTGTTGCCA mismatches: 2 bulges: 2 |
pre-miRNA
CTTGCATAACATGGGCATGCACTCTTGTTGCCATAGGTACCTGGTGGAACACACCGGCATCTGTTGCAGCAGGTTTTGCATGCTCTGTGGCATAC
dot-bracket secondary structure
..(((...(((.(((((((((..((((((((.((((((.((.((((.....)))))).)))))).))))))))...)))))))))))).)))...
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CTTGCATAACATGGGCATGCACTCTTGTTGCCATAGGTACCTGGTGGAACACACCGGCATCTGTTGCAGCAGGTTTTGCATGCTCTGTGGCATAC
dot-bracket secondary structure
..(((...(((.(((((((((..((((((((.((((((.((.((((.....)))))).)))))).))))))))...)))))))))))).)))...
SIMILARITIES| miRBase no hits PMRD ptc-miRf10626-akr: 5e-46 microPC no hits | UniProt sp|P46689|GASA1_ARATH: 0.0000000007 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
