ABOUT THIS RECORDspecies: Populus nigra
miRNA family: MIR1447
source: miRNEST
Taxonomy by NCBI:
Populus nigra Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGAATTGCAGTGCCCTGATT miRNA* TCAAGGCACTGCAATTCTGAC mismatches: 1 bulges: 0 |
pre-miRNA
ACAAAGCCCAAATCAAGGCACTGCAATTCTGACTAATAAATGATATGTAAATTTCAAACGTCTAGCATCGCCACTTGCCAACAGACATTTTAGAATTGCA
GTGCCCTGATTAGGGCCTCC
dot-bracket secondary structure
.....((((.(((((.((((((((((((((((..(((...(((.((....)).)))...((((.(((........)))....))))))))))))))))))
))))).))))).))))....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ACAAAGCCCAAATCAAGGCACTGCAATTCTGACTAATAAATGATATGTAAATTTCAAACGTCTAGCATCGCCACTTGCCAACAGACATTTTAGAATTGCA
GTGCCCTGATTAGGGCCTCC
dot-bracket secondary structure
.....((((.(((((.((((((((((((((((..(((...(((.((....)).)))...((((.(((........)))....))))))))))))))))))
))))).))))).))))....
SIMILARITIES| miRBase ptc-MIR1447: 2e-52 PMRD ptc-miRf11238-akr: 3e-54 microPC miR1447: 9e-39 | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
