miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



ABOUT THIS RECORD

ID: MNEST002116
species: Populus nigra
miRNA family: MIR2673
source: miRNEST

Taxonomy by NCBI:
Populus nigra Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CATCTTCCTCTTCCTCTTCCT

miRNA*
 GAGGAGGGGATGGGGAAGAAGGG

mismatches: 2
bulges: 2
View larger
pre-miRNA
 GAACAAATCTCTCCCATCTTCCTCTTCCTCTTCCTCTCTCCTTTACACATACACACAACACGCAGCAGACCACAACGAAAAAGATATATATATTTTAGGA
TCCAACAAAATCACATATTTACAGAGAGACACACACAGAAGAAGCATCCATCAATGCCTGCCGACAACACCCCTCCTTCTTCACCACACAACATTAATCC
CCACAATGAAGAACAACAACATCAGCAGCAGCAACAACAAGACTTGTCTGAGCTGTCTCCTCCTCGACAAAACGGTCATCCAACTGACCAAGAACCACAC
CACCTTCAAAACGGCCAGCATCAAGAAGAAGGGGAAGAGGGAGAGGAAGAAGTAGACATCAAAGAACAAGAGGTTAAAAAAGAAGAAGAGGGAGTGGAAG
GAGGAGGAGGAGGGGATGGGGAAGAAGGGAAAGAAGAATC

dot-bracket secondary structure
.......(((.((((.((((((((.(((((((((((.(((((((.........(((....((..((((....((..((..((((((....)))))).(((
(............................................)))).))..)).)))))).......(((((.((((((.....((..((((.....
....))))..((.........)).(((((..((((((......)))).)).))))).((.(((((........(((((......))))).....((...(
(.(((((....................))))))).....)).))))).)).)).(((.((.........)).)))......))))))))))).)))))))
))))))))))))))...)))))))).)))).)))......


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM mir-598: 0.00003		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record




Liczniki na strone;