ABOUT THIS RECORDspecies: Populus nigra
miRNA family: MIR162
source: miRNEST
Taxonomy by NCBI:
Populus nigra Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGATAAACCTCTGCATCCA miRNA* GAGGCAGCGGTTCATCGATC mismatches: 4 bulges: 0 |
pre-miRNA
TGGTGGGTTGGGAAGACACTNGGAGGCAGCGGTTCATCGATCTCTTCCTGGCCAATTTTTTGTTTAGCACGAAAAACATGAACCGATCGATAAACCTCTG
CATCCAGCGCTTCCTTTATTCCCCT
dot-bracket secondary structure
.((.(((..((((((...(..(((.((((.((((.(((((((..(((.((.....((((((((.....)))))))))).)))..))))))).)))).)))
).))).)..))))))....))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
Source sequences
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TGGTGGGTTGGGAAGACACTNGGAGGCAGCGGTTCATCGATCTCTTCCTGGCCAATTTTTTGTTTAGCACGAAAAACATGAACCGATCGATAAACCTCTG
CATCCAGCGCTTCCTTTATTCCCCT
dot-bracket secondary structure
.((.(((..((((((...(..(((.((((.((((.(((((((..(((.((.....((((((((.....)))))))))).)))..))))))).)))).)))
).))).)..))))))....))))).
SIMILARITIES| miRBase ptc-MIR162a: 7e-52 PMRD ptc-miR162a: 7e-52 microPC miR162: 2e-43 | UniProt no hits RFAM MIR162_2: 7e-43 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
Source sequences
download this record
