ABOUT THIS RECORDspecies: Populus nigra
miRNA family: miR162
source: miRNEST
Taxonomy by NCBI:
Populus nigra Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA NGGAGGCAGCGGTTCATCGAT miRNA* CGATAAACCTCTGCATCCAGC mismatches: 4 bulges: 0 |
pre-miRNA
GTGGTGGGTTGGGAAGACACTNGGAGGCAGCGGTTCATCGATCTCTTCCTGGCCAATTTTTTGTTTAGCACGAAAAACATGAACCGATCGATAAACCTCT
GCATCCAGCGCTTCCTTTATTCCCCTT
dot-bracket secondary structure
..((.(((..((((((...(..(((.((((.((((.(((((((..(((.((.....((((((((.....)))))))))).)))..))))))).)))).))
)).))).)..))))))....)))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
Source sequences
download this record
GTGGTGGGTTGGGAAGACACTNGGAGGCAGCGGTTCATCGATCTCTTCCTGGCCAATTTTTTGTTTAGCACGAAAAACATGAACCGATCGATAAACCTCT
GCATCCAGCGCTTCCTTTATTCCCCTT
dot-bracket secondary structure
..((.(((..((((((...(..(((.((((.((((.(((((((..(((.((.....((((((((.....)))))))))).)))..))))))).)))).))
)).))).)..))))))....)))))..
SIMILARITIES| miRBase ptc-MIR162a: 7e-52 PMRD ptc-miR162a: 7e-52 microPC miR162: 2e-43 | UniProt no hits RFAM MIR162_2: 7e-43 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
Source sequences
download this record
