ABOUT THIS RECORDspecies: Populus nigra
miRNA family: MIRf235
source: miRNEST
Taxonomy by NCBI:
Populus nigra Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGTGGTAAGAGCTTGGGACTA miRNA* GGTCTCAGGTTCAAACCTTATG mismatches: 5 bulges: 1 |
pre-miRNA
TAGGTGGTGGCCTAGTGGTAAGAGCTTGGGACTAAGGGGTTTGCTCCCTCTTAGGTCTCAGGTTCAAACCTTATGGCTGCTCATA
dot-bracket secondary structure
...(((((((((....(((..((((((((((((((((((.......))))))).)))))))))))..)))....)))))).))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TAGGTGGTGGCCTAGTGGTAAGAGCTTGGGACTAAGGGGTTTGCTCCCTCTTAGGTCTCAGGTTCAAACCTTATGGCTGCTCATA
dot-bracket secondary structure
...(((((((((....(((..((((((((((((((((((.......))))))).)))))))))))..)))....)))))).))).
SIMILARITIES| miRBase no hits PMRD ptc-miRf11096-akr: 5e-24 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
