miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



ABOUT THIS RECORD

ID: MNEST002127
species: Populus nigra
miRNA family: miR168a
source: miRNEST

Taxonomy by NCBI:
Populus nigra Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CCCGCCTTGCATCAACTGAAT

miRNA*
 TCGCTTGGTGCAGGTCGGGAA

mismatches: 2
bulges: 0
View larger
pre-miRNA
 ATTTACTTACCGGCGGTCTCTGATTCGCTTGGTGCAGGTCGGGAACTGATTCGGCGATTTGATTGCCAGATGGCTCGACATGACTGGTTGTTGTGGAAAA
AGAAAAGGAAGGAAATAGGAAAAAAAAAACAAAGAATAGCGAATTGGATCCCGCCTTGCATCAACTGAATCGGAGGCCGCGGTGAAGCAGA

dot-bracket secondary structure
......((((((.((((((((((((((.((((((((((.(((((.((((((((.(.((((....((((((((......)))..)))))..((((......
............................)))).)))).))))))))).))))).)))))))))).))))))))))))))))))))......


SIMILARITIES
miRBase ptc-MIR168a: 2e-65

PMRD ptc-miR168a: 2e-65

microPC miR168: 5e-60		UniProt no hits

RFAM MIR168: 2e-75		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;