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ABOUT THIS RECORD

ID: MNEST002128
species: Populus nigra
miRNA family: MIR168
source: miRNEST

Taxonomy by NCBI:
Populus nigra Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGCTTGGTGCAGGTCGGGAA

miRNA*
 CCCGCCTTGCATCAACTGAAT

mismatches: 3
bulges: 0
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pre-miRNA
 GATTTACTTACCGGCGGTCTCTGATTCGCTTGGTGCAGGTCGGGAACTGATTCGGCGATTTGATTGCCAGATGGCTCGACATGACTGGTTGTTGTGGAAA
AAGAAAAGGAAGGAAATAGGAAAAAAAAAACAAAGAATAGCGAATTGGATCCCGCCTTGCATCAACTGAATCGGAGGCCGCGGTGAAGCAGAA

dot-bracket secondary structure
.......((((((.((((((((((((((.((((((((((.(((((.((((((((.(.((((....((((((((......)))..)))))..((((.....
.............................)))).)))).))))))))).))))).)))))))))).)))))))))))))))))))).......


SIMILARITIES
miRBase ptc-MIR168a: 2e-65

PMRD ptc-miR168a: 2e-65

microPC miR168: 5e-60		UniProt no hits

RFAM MIR168: 2e-75		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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