ABOUT THIS RECORDspecies: Populus nigra
miRNA family: MIRf11
source: miRNEST
Taxonomy by NCBI:
Populus nigra Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTTCCGGAAACCACTTTCTG miRNA* GAAAGTGTTTTCCGTTGACC mismatches: 3 bulges: 1 |
pre-miRNA
CATGAAAGTTTAGAAAGTGATTTTCCGGAAACCACTTTCTGAAAAATAAACACAGCCAAAAGAGAATATTTTCTTGGAAACCAAGTCAAATTTTTCTTTG
ACTGGAAAGTGTTTTTCGTTAACCAGAAAGTGTTTTCCGTTGACCACCTTTTCTAATGGCA
dot-bracket secondary structure
.((....))((((((((((.((...((((((.(((((((((.((...((((((..(((..((((((.((((.(((((...)))))..))))..)))))).
..)))...))))))....))...))))))))).))))))..)).)))..))))))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CATGAAAGTTTAGAAAGTGATTTTCCGGAAACCACTTTCTGAAAAATAAACACAGCCAAAAGAGAATATTTTCTTGGAAACCAAGTCAAATTTTTCTTTG
ACTGGAAAGTGTTTTTCGTTAACCAGAAAGTGTTTTCCGTTGACCACCTTTTCTAATGGCA
dot-bracket secondary structure
.((....))((((((((((.((...((((((.(((((((((.((...((((((..(((..((((((.((((.(((((...)))))..))))..)))))).
..)))...))))))....))...))))))))).))))))..)).)))..))))))).....
SIMILARITIES| miRBase no hits PMRD ptc-miRf11300-akr: 3e-36 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
