ABOUT THIS RECORDspecies: Populus nigra
miRNA family: MIR1444
source: miRNEST
Taxonomy by NCBI:
Populus nigra Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCACATTCGGTCAATGTTC miRNA* ATATTGACCGAATATGGATG mismatches: 1 bulges: 0 |
pre-miRNA
GTTTATCACTTGAATATTGACCGAATATGGATGAAAAGTTGTTCTCTGTTTCCTTTCCTCCACATTCGGTCAATGTTCCAGTGATGGG
dot-bracket secondary structure
..((((((((.(((((((((((((((.((((.((((.................)))).)))).))))))))))))))).)))))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GTTTATCACTTGAATATTGACCGAATATGGATGAAAAGTTGTTCTCTGTTTCCTTTCCTCCACATTCGGTCAATGTTCCAGTGATGGG
dot-bracket secondary structure
..((((((((.(((((((((((((((.((((.((((.................)))).)))).))))))))))))))).)))))))).
SIMILARITIES| miRBase ptc-MIR1444a: 6e-39 PMRD ptc-miRf10525-akr: 6e-39 microPC miR1444: 2e-32 | UniProt no hits RFAM MIR1444: 4e-37 | most similar mature miRNAs |
Identical with: miR1444 from microPC (MNEST045650) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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