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ABOUT THIS RECORD

ID: MNEST002136
species: Populus nigra
miRNA family: MIR393
source: miRNEST

Taxonomy by NCBI:
Populus nigra Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCCAAAGGGATCGCATTGATC

miRNA*
 TCATGCGATCCCTTAGGAAT

mismatches: 1
bulges: 1
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pre-miRNA
 ATCAATATCCTTCTTAGTGCAGCTGGAGTGTTCCAAAGGGATCGCATTGATCTAATGACTCTCGATGTCTAAATCATATTAATGTTTAGTCTTTTCGTTG
GATCATGCGATCCCTTAGGAATTTTCCAGCATTCAGCTCTAAATTTCACC

dot-bracket secondary structure
.............((((.((.(((((((.(((((.((((((((((((.((((((((((..........(((((.(((....)))))))).....))))))
)))))))))))))))).))))).))))))).....)).))))........


SIMILARITIES
miRBase ptc-MIR393c: 1e-53

PMRD ptc-miR393c: 1e-53

microPC miR393: 3e-45		UniProt no hits

RFAM no hits		most similar mature miRNAs

Identical with: miR393 from microPC (MNEST045740)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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