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ABOUT THIS RECORD

ID: MNEST002139
species: Populus nigra
miRNA family: MIR408
source: miRNEST

Taxonomy by NCBI:
Populus nigra Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGCACTGCCTCTTCCCTGGCT

miRNA*
ACGGGGAACAGGCAGAGCATG

mismatches: 3
bulges: 0

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pre-miRNA
CAGATGAAGACGGGGAACAGGCAGAGCATGGATGGAGCTACTAACAGAAGTACTTGTTTTGGCTCTACCCATGCACTGCCTCTTCCCTGGCTTGTGGC

dot-bracket secondary structure
......(((.(((((((.((((((.((((((.((((((((..(((((......))))).)))))))).)))))).)))))).))))))).))).....


SIMILARITIES
miRBase ptc-MIR408: 8e-51

PMRD ptc-miR408: 8e-51

microPC miR408: 5e-43
UniProt no hits

RFAM MIR408: 1e-49
most similar mature miRNAs

Identical with: miR408 from microPC (MNEST046505)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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