ABOUT THIS RECORDspecies: Populus nigra
miRNA family: MIR2673
source: miRNEST
Taxonomy by NCBI:
Populus nigra Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCTCTTCCTCTTCCTCTTCCT miRNA* AAAGAAGAAGCGAAGGCTG mismatches: 4 bulges: 2 |
pre-miRNA
CTTCTTCCACAGCTCTTCCTCTTCCTCTTCCTCTTCCAGGTTAAATCTTTTGTAGAAAATGAGAGCTTCCAGTACTTCATTTCACTTCTTAGAATCCACT
TCTCTCTGTAGAGCACCTGTCGACATTTCCCGGTCTCAACTTTCTATTCCTAGGAAGCTCTTTTTTTGCCGAGCAAATTTTGATGGATCCTTCAGCTCGA
GAGTGAGAGTGGTGCCAGCAACTCTGGTGGCAGCAGAAAAAGAAGAAGCGAAGGCTGTCCTAAAC
dot-bracket secondary structure
........(((((.((((..((((.((((..(((...((((...))))(((..((((((((((.(((...)))..))))))....))))..))).(((((
(..((((...((((..(((((((.((((..((((.....(((((((....)))))))..........))))...)))).)))))))........)))).)
)))...))))))(((((.((....)).)))))..)))..)))).)))).))))))))).......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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CTTCTTCCACAGCTCTTCCTCTTCCTCTTCCTCTTCCAGGTTAAATCTTTTGTAGAAAATGAGAGCTTCCAGTACTTCATTTCACTTCTTAGAATCCACT
TCTCTCTGTAGAGCACCTGTCGACATTTCCCGGTCTCAACTTTCTATTCCTAGGAAGCTCTTTTTTTGCCGAGCAAATTTTGATGGATCCTTCAGCTCGA
GAGTGAGAGTGGTGCCAGCAACTCTGGTGGCAGCAGAAAAAGAAGAAGCGAAGGCTGTCCTAAAC
dot-bracket secondary structure
........(((((.((((..((((.((((..(((...((((...))))(((..((((((((((.(((...)))..))))))....))))..))).(((((
(..((((...((((..(((((((.((((..((((.....(((((((....)))))))..........))))...)))).)))))))........)))).)
)))...))))))(((((.((....)).)))))..)))..)))).)))).))))))))).......
SIMILARITIES| miRBase mtr-MIR2673b: 0.00000006 PMRD no hits microPC no hits | UniProt no hits RFAM 7SK: 0.000004 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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