ABOUT THIS RECORDspecies: Populus nigra
miRNA family: MIR414
source: miRNEST
Taxonomy by NCBI:
Populus nigra Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCATCATCATCATCATCCTCT miRNA* ACACGATGATCTTGATTATGATA mismatches: 4 bulges: 2 |
pre-miRNA
TGATAGACACGATGATCTTGATTATGATACAGTTTTTACATAGCTGGTGCTTTTCGCCATGGATTCTCTTCTCTTGTACCTTCCTCCTCTCTTTTCCATA
ACCACAACGCCTTCAGTTAACAGCTTGACCTCTGGCAAAAGCCACTGCTCCTTCATGGAAATGTGGTGGCTTAGCATCGAAATCTTTCGGCGGCACCTTA
CATTCGACATCATCATCATCATCATCATCCTCTGTT
dot-bracket secondary structure
.((((((...((((((..((((.(((((...(((...........(((((....((((..(((((.((..((.((((.......................
...)))).(((....(((((....)))))....)))..(((((((((((((.....)))...))))))))))))....)))))))...)))))))))...
.....)))...))))).))))..)))))).))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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TGATAGACACGATGATCTTGATTATGATACAGTTTTTACATAGCTGGTGCTTTTCGCCATGGATTCTCTTCTCTTGTACCTTCCTCCTCTCTTTTCCATA
ACCACAACGCCTTCAGTTAACAGCTTGACCTCTGGCAAAAGCCACTGCTCCTTCATGGAAATGTGGTGGCTTAGCATCGAAATCTTTCGGCGGCACCTTA
CATTCGACATCATCATCATCATCATCATCCTCTGTT
dot-bracket secondary structure
.((((((...((((((..((((.(((((...(((...........(((((....((((..(((((.((..((.((((.......................
...)))).(((....(((((....)))))....)))..(((((((((((((.....)))...))))))))))))....)))))))...)))))))))...
.....)))...))))).))))..)))))).))))))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
