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ABOUT THIS RECORD

ID: MNEST002148
species: Populus nigra
miRNA family: MIR414
source: miRNEST

Taxonomy by NCBI:
Populus nigra Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCATCATCATCATCATCCTCT

miRNA*
ACACGATGATCTTGATTATGATA

mismatches: 4
bulges: 2

View larger
pre-miRNA
TGATAGACACGATGATCTTGATTATGATACAGTTTTTACATAGCTGGTGCTTTTCGCCATGGATTCTCTTCTCTTGTACCTTCCTCCTCTCTTTTCCATA
ACCACAACGCCTTCAGTTAACAGCTTGACCTCTGGCAAAAGCCACTGCTCCTTCATGGAAATGTGGTGGCTTAGCATCGAAATCTTTCGGCGGCACCTTA
CATTCGACATCATCATCATCATCATCATCCTCTGTT


dot-bracket secondary structure
.((((((...((((((..((((.(((((...(((...........(((((....((((..(((((.((..((.((((.......................
...)))).(((....(((((....)))))....)))..(((((((((((((.....)))...))))))))))))....)))))))...)))))))))...
.....)))...))))).))))..)))))).))))))



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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