ABOUT THIS RECORDspecies: Populus tremula
miRNA family: MIRf1612
source: miRNEST
Taxonomy by NCBI:
Populus tremula Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGCCCACCATGGTGACCGTCC miRNA* ATGGTTATCGTGGGGGC mismatches: 2 bulges: 1 |
pre-miRNA
GCCCATTTGGAGGCCCACCATGGTGACCGTCCCCGAGGTCCACCTCGCTTTGAACGGAGACCGATCCTAGATTTGGTAGACCGTGATGGTTATCGTGGGG
GC
dot-bracket secondary structure
..((....))..((((.((((((((((((((.....((((.(((...((..((.(((...))).))..))....))).))))..))))))))))))))))
))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
GCCCATTTGGAGGCCCACCATGGTGACCGTCCCCGAGGTCCACCTCGCTTTGAACGGAGACCGATCCTAGATTTGGTAGACCGTGATGGTTATCGTGGGG
GC
dot-bracket secondary structure
..((....))..((((.((((((((((((((.....((((.(((...((..((.(((...))).))..))....))).))))..))))))))))))))))
))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
