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ABOUT THIS RECORD

ID: MNEST002158
species: Populus tremula
miRNA family: MIR169
source: miRNEST

Taxonomy by NCBI:
Populus tremula Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 AGCCAAGGATGATTTGCCGAC

miRNA*
 TGGCAGGTTTTCCTTGGCTAC

mismatches: 1
bulges: 0
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pre-miRNA
 AGTTGCTGTCTCACTGTAGCGGCCTTGCATGGAGGCTCATAAAGTTTGATGCAGCCAAGGATGATTTGCCGACGACTCAGTTTTTGCTTCCATATGGTAGG
AGAGATGAAGAGGTTGGCAGGTTTTCCTTGGCTACATTTTCCTTTCTGCTCCTCATGCTAGGTTTATGGTGATGATCCTTATA

dot-bracket secondary structure
)......((((((((((((..((((.(((((.(((..((.((((...((((.(((((((((.(((((((((((..(((.((((((.((.((....)).)).
))))))...)))))))))))))).))))))))).))))...)))).))..)))))))).))))))))))))).))).......


SIMILARITIES
miRBase ptc-MIR169c: 2.0E-43

PMRD ptc-miR169c: 2.0E-43

microPC miR169: 9.0E-6		UniProt no hits

RFAM 2MIR169_2: 1.0E-45		most similar mature miRNAs

Identical with: ptr-miR169b from PMRD (MNEST054368)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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