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ABOUT THIS RECORD

ID: MNEST002159
species: Populus tremula
miRNA family: MIR169
source: miRNEST

Taxonomy by NCBI:
Populus tremula Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TAGCCAAGGATGACTTGCCTG

miRNA*
 GCAAGTGTCCTTGGCTAAC

mismatches: 0
bulges: 2
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pre-miRNA
 GAAGGAAGGTACTGAAGAGAGATCCAACATGAAGATAAAGAGTCTTGTTTGGTAGCCAAGGATGACTTGCCTGTAGCCTCCCTCGGATTCAAGAACACGAG
CATTTATGCAGTGCTCAAAAGAAAAGGAGAGAATGATCCCAGCTTGCTGCGCGCTACAAGGTCAATCCATGGAAGCAGCGAGAAGAAGGTGGTTTATAGC
TAGAATCCTCATGAGGTTCACAGCAAGTGTCCTTGGCTAACGAGACGGGCTCTTATCTTTCATGTTGGATCTGTTCTTCGTGTGCTCTG

dot-bracket secondary structure
)......(((((((((((((((((((((((((((((((.((((((..((((.(((((((((((.((((((.(((((((((....((((((.((..(((..(
((....))).)))(((..........))).((((.(((....((((((((...(((...((.....)).)))..)))))))).....))).))))....)
).))))))....)))))).)))))))))))))))))))).))))..))))))))))).)))))))))))))).))))))).)))))...


SIMILARITIES
miRBase ptc-MIR169k: 1.0E-76

PMRD ptc-miR169k: 1.0E-76

microPC miR169: 1.0E-104		UniProt no hits

RFAM 2MIR169_2: 2.0E-79		most similar mature miRNAs

Identical with: miR169 from microPC (MNEST045718)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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