ABOUT THIS RECORDspecies: Populus tremula
miRNA family: MIR169
source: miRNEST
Taxonomy by NCBI:
Populus tremula Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGCCAAGGATGACTTGCCGA miRNA* GGCAGGTTGTTCTTGGCTACA mismatches: 1 bulges: 0 |
pre-miRNA
TAGCCTTCCATGGAGGATCATAAAGATTGATGCAGCCAAGGATGACTTGCCGACGACTCGCTTTTGCTTTTGCTTCCATCAATATAGGCATAATCAAGAAG
AGATGAATCCGTTGGCAGGTTGTTCTTGGCTACATTTTTCTTTCTGCTCCTCATGCCAAGCT
dot-bracket secondary structure
)(((....((((.((((.((.(((((..((((.((((((((((((((((((((((.(((..(((((.((.(((((..........))))).)).))))).)
)).......)))))))))))))))))))))).))))..))))).)).))))))))....)))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TAGCCTTCCATGGAGGATCATAAAGATTGATGCAGCCAAGGATGACTTGCCGACGACTCGCTTTTGCTTTTGCTTCCATCAATATAGGCATAATCAAGAAG
AGATGAATCCGTTGGCAGGTTGTTCTTGGCTACATTTTTCTTTCTGCTCCTCATGCCAAGCT
dot-bracket secondary structure
)(((....((((.((((.((.(((((..((((.((((((((((((((((((((((.(((..(((((.((.(((((..........))))).)).))))).)
)).......)))))))))))))))))))))).))))..))))).)).))))))))....)))
SIMILARITIES| miRBase ptc-MIR169b: 3.0E-42 PMRD ptr-miR169a: 2.0E-52 microPC miR169: 9.0E-52 | UniProt no hits RFAM 2MIR169_2: 2.0E-44 | most similar mature miRNAs |
Identical with: miR169 from microPC (MNEST045442), ptr-miR169a from PMRD , miR169 from microPC |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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