ABOUT THIS RECORDspecies: Populus tremula
miRNA family: MIR169
source: miRNEST
Taxonomy by NCBI:
Populus tremula Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGCCAAGGATGACTTGCCGA miRNA* GGCAGGTTGTTCTTGGCTACA mismatches: 1 bulges: 0 |
pre-miRNA
AGCCTTCCATGGAGGATCATAAAGATTGATGCAGCCAAGGATGACTTGCCGACGACTCGCTTTTGCTTTTGCTTCCATCAATATAGGCATAATCAAGAAG
AGATGAATCCGTTGGCAGGTTGTTCTTGGCTACATTTTTCTTTCTGCTCCTCATGCCAAGCT
dot-bracket secondary structure
(((....((((.((((.((.(((((..((((.((((((((((((((((((((((.(((..(((((.((.(((((..........))))).)).))))).)
)).......)))))))))))))))))))))).))))..))))).)).))))))))....)))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
AGCCTTCCATGGAGGATCATAAAGATTGATGCAGCCAAGGATGACTTGCCGACGACTCGCTTTTGCTTTTGCTTCCATCAATATAGGCATAATCAAGAAG
AGATGAATCCGTTGGCAGGTTGTTCTTGGCTACATTTTTCTTTCTGCTCCTCATGCCAAGCT
dot-bracket secondary structure
(((....((((.((((.((.(((((..((((.((((((((((((((((((((((.(((..(((((.((.(((((..........))))).)).))))).)
)).......)))))))))))))))))))))).))))..))))).)).))))))))....)))
SIMILARITIES| miRBase ptc-MIR169b: 3e-42 PMRD ptr-miR169a: 2e-52 microPC miR169: 9e-52 | UniProt no hits RFAM MIR169_2: 2e-44 | most similar mature miRNAs |
Identical with: miR169 from microPC (MNEST045442) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
