ABOUT THIS RECORDspecies: Populus tremula
miRNA family: MIRf312
source: miRNEST
Taxonomy by NCBI:
Populus tremula Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTATTAAACCCGAACCGGTCT miRNA* GCCGGGCGGGTTTAATAACT mismatches: 2 bulges: 1 |
pre-miRNA
GGTTTGGCCGGGTTGTTGCCACAGCCGGTCTTTATTAAACCCGAACCGGTCTAGCTACCGGGTTGACCGGGTCGACCCGCCGGGCCGGGCGGGTTTAATA
ACTATGGTCCATAGGGTTACGTAGAAAGGAG
dot-bracket secondary structure
.....((((((.((((....))))))))))..(((((((((((..(((((((.((....((((((((...)))))))))).))))))).)))))))))))
.(((((..((....))...))))).......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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GGTTTGGCCGGGTTGTTGCCACAGCCGGTCTTTATTAAACCCGAACCGGTCTAGCTACCGGGTTGACCGGGTCGACCCGCCGGGCCGGGCGGGTTTAATA
ACTATGGTCCATAGGGTTACGTAGAAAGGAG
dot-bracket secondary structure
.....((((((.((((....))))))))))..(((((((((((..(((((((.((....((((((((...)))))))))).))))))).)))))))))))
.(((((..((....))...))))).......
SIMILARITIES| miRBase no hits PMRD ptc-miRf12130-akr: 1e-19 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
