ABOUT THIS RECORDspecies: Populus tremula
miRNA family: MIR476
source: miRNEST
Taxonomy by NCBI:
Populus tremula Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGTAATCCTTCTTTGCAAAG miRNA* TTGCTAAGATAGATTTACTAGC mismatches: 3 bulges: 1 |
pre-miRNA
TTAATTGCGTTTATGATTAAGCTAGTAATCCTTCTTTGCAAAGTCATTTATTATTTTTCCTTTAATTACTATAATCAATGACTTTGCTAAGATAGATTTAC
TAGCTAAATCTTAAAAGCTTTT
dot-bracket secondary structure
).....((.((((.((((.(((((((((((..((((.(((((((((((.(((((................))))).))))))))))).))))..)).))))
))))).)))).)))).))....
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTAATTGCGTTTATGATTAAGCTAGTAATCCTTCTTTGCAAAGTCATTTATTATTTTTCCTTTAATTACTATAATCAATGACTTTGCTAAGATAGATTTAC
TAGCTAAATCTTAAAAGCTTTT
dot-bracket secondary structure
).....((.((((.((((.(((((((((((..((((.(((((((((((.(((((................))))).))))))))))).))))..)).))))
))))).)))).)))).))....
SIMILARITIES| miRBase ptc-MIR476a: 1.0E-44 PMRD ptc-miR476a: 1.0E-44 microPC miR476: 1.0E-40 | UniProt no hits RFAM 6MIR476: 4.0E-41 | most similar mature miRNAs |
Identical with: miR476 from microPC (MNEST044929) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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