ABOUT THIS RECORDspecies: Populus tremula
miRNA family: MIRf591
source: miRNEST
Taxonomy by NCBI:
Populus tremula Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGCAAGTCATCCTTGGCTGCA miRNA* TAGCCAAGAACAACCTGCCAA mismatches: 5 bulges: 0 |
pre-miRNA
GTAATCACCATAAGCCTGGCATGAGGAGCAGAAAGAAAAATGTAGCCAAGAACAACCTGCCAACGGATTCATCTCTTCTTGATTATGCCTATATTGATGGA
AGCAAAAGCAAAAGCGAGTCGTCGGCAAGTCATCCTTGGCTGCATCAATCTTTATGATCCTCCATGGAAGGCTGTTACAGTG
dot-bracket secondary structure
)...........(((((..((((((((.((.(((((...(((((((((((....((.((((.((((.....((.(((.(((.((.(((((((....)))).
.))).)).)))))).)).)))).)))).))....)))))))))))...))))).)).)))).))))..))))).........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GTAATCACCATAAGCCTGGCATGAGGAGCAGAAAGAAAAATGTAGCCAAGAACAACCTGCCAACGGATTCATCTCTTCTTGATTATGCCTATATTGATGGA
AGCAAAAGCAAAAGCGAGTCGTCGGCAAGTCATCCTTGGCTGCATCAATCTTTATGATCCTCCATGGAAGGCTGTTACAGTG
dot-bracket secondary structure
)...........(((((..((((((((.((.(((((...(((((((((((....((.((((.((((.....((.(((.(((.((.(((((((....)))).
.))).)).)))))).)).)))).)))).))....)))))))))))...))))).)).)))).))))..))))).........
SIMILARITIES| miRBase ptc-MIR169b: 4.0E-42 PMRD ptr-miR169a: 3.0E-52 microPC miR169: 1.0E-51 | UniProt no hits RFAM 2MIR169_2: 2.0E-44 | most similar mature miRNAs |
Identical with: miR169 from microPC (MNEST045442), ptr-miR169a from PMRD , miR169 from microPC |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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