ABOUT THIS RECORDspecies: Populus tremula x Populus alba
miRNA family: MIRf93
source: miRNEST
Taxonomy by NCBI:
Populus tremula x Populus alba Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCAGACCCAATAGCCTTGGAT miRNA* CCAATAATATTGGGTTTGGCT mismatches: 3 bulges: 0 |
pre-miRNA
GTAAAGCTATATCCAATAATATTGGGTTTGGCTATAACATCTTACCTAAAAGTAATATTTATAATAGTAATAATAATATTAAACTTGCATGACCTAGTAG
GTCTAGCTCCAATACCAGACCCAATAGCCTTGGATGCGGATCTG
dot-bracket secondary structure
......((.(((((((...((((((((((((.(((((.((.((((......)))).))))))).((....))....((((......((..(((((...))
)))..))...))))))))))))))))...))))))).)).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GTAAAGCTATATCCAATAATATTGGGTTTGGCTATAACATCTTACCTAAAAGTAATATTTATAATAGTAATAATAATATTAAACTTGCATGACCTAGTAG
GTCTAGCTCCAATACCAGACCCAATAGCCTTGGATGCGGATCTG
dot-bracket secondary structure
......((.(((((((...((((((((((((.(((((.((.((((......)))).))))))).((....))....((((......((..(((((...))
)))..))...))))))))))))))))...))))))).)).....
SIMILARITIES| miRBase no hits PMRD ptc-miRf12497-akr: 3e-20 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
