ABOUT THIS RECORDspecies: Populus tremula x Populus alba
miRNA family: MIRf126
source: miRNEST
Taxonomy by NCBI:
Populus tremula x Populus alba Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTCACTCTTACAGTGCCCAT miRNA* GGCCATTGTAAGAGTAGAAGGA mismatches: 1 bulges: 1 |
pre-miRNA
GTAGTTATAACATCTTGATCAATGGCCATTGTAAGAGTAGAAGGATCCATGAAGCAATAACTCTCTTTGCTAAAATGTGTGATAAAACATTGACTCCTGGT
ATTTCACTCTTACAGTGCCCATTGATTAAGATGGTATAATG
dot-bracket secondary structure
)..((((((.(((((((((((((((.((((((((((((.((((...(((.(((((((.........)))))..(((((........)))))...)).))).
.)))))))))))))))).))))))))))))))).)))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GTAGTTATAACATCTTGATCAATGGCCATTGTAAGAGTAGAAGGATCCATGAAGCAATAACTCTCTTTGCTAAAATGTGTGATAAAACATTGACTCCTGGT
ATTTCACTCTTACAGTGCCCATTGATTAAGATGGTATAATG
dot-bracket secondary structure
)..((((((.(((((((((((((((.((((((((((((.((((...(((.(((((((.........)))))..(((((........)))))...)).))).
.)))))))))))))))).))))))))))))))).)))))).
SIMILARITIES| miRBase ptc-MIR475a: 4.0E-66 PMRD ptc-miRf10050-akr: 2.0E-74 microPC miR475: 1.0E-62 | UniProt no hits RFAM 5MIR475: 5.0E-38 | most similar mature miRNAs |
Identical with: miR475 from microPC (MNEST045347), ptc-miRf10947-akr from PMRD , ptc-miR475a from PMRD , ptc-miRf10050-akr from PMRD , ptc-miRf10048-akr from PMRD , ptc-miRf10049-akr from PMRD , ptc-MIR475a from miRBase |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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