ABOUT THIS RECORDspecies: Populus tremula x Populus tremuloides
miRNA family: MIRf35
source: miRNEST
Taxonomy by NCBI:
Populus tremula x Populus tremuloides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACATTGTTGCCCGAGAAGACC miRNA* GCTTCTAGGGTGATGAATCA mismatches: 5 bulges: 1 |
pre-miRNA
TTAAAACTAGATTTCCTCACTTGCTTCTAGGGTGATGAATCATGATGCCGATAATTAAGGATGACATTGTTGCCCGAGAAGACCTTGGAGTTCCTGTATT
TAT
dot-bracket secondary structure
.....((..((.((((.......(((((.(((((((((.((((....((.........))))))..))))))))).))))).....)))).))..))...
...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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TTAAAACTAGATTTCCTCACTTGCTTCTAGGGTGATGAATCATGATGCCGATAATTAAGGATGACATTGTTGCCCGAGAAGACCTTGGAGTTCCTGTATT
TAT
dot-bracket secondary structure
.....((..((.((((.......(((((.(((((((((.((((....((.........))))))..))))))))).))))).....)))).))..))...
...
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
