ABOUT THIS RECORDspecies: Populus tremula x Populus tremuloides
miRNA family: MIRf1095
source: miRNEST
Taxonomy by NCBI:
Populus tremula x Populus tremuloides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCCAAGAGAACAAGGTTCCAC miRNA* AGGACCTATGAATTCTTGGCGG mismatches: 3 bulges: 1 |
pre-miRNA
CAATGTACCAAGCCAAGAGAACAAGGTTCCACGACATGAGATGGGAGGATTATTATGTCATGTGTAGGACCTATGAATTCTTGGCGGACCATCAC
dot-bracket secondary structure
...........((((((((..((((((((.((.((((((.((((........)))).)))))))).)))))).))..))))))))..........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
CAATGTACCAAGCCAAGAGAACAAGGTTCCACGACATGAGATGGGAGGATTATTATGTCATGTGTAGGACCTATGAATTCTTGGCGGACCATCAC
dot-bracket secondary structure
...........((((((((..((((((((.((.((((((.((((........)))).)))))))).)))))).))..))))))))..........
SIMILARITIES| miRBase no hits PMRD ptc-miRf11279-akr: 4e-34 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
