ABOUT THIS RECORDspecies: Populus tremula x Populus tremuloides
miRNA family: MIR167
source: miRNEST
Taxonomy by NCBI:
Populus tremula x Populus tremuloides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTA miRNA* GGTCATGCTCTGACAGCCTCACT mismatches: 2 bulges: 2 |
pre-miRNA
CAGAAGTTCACAAGGGAAAAGGTGAAGCTGCCAGCATGATCTATCTTTGGTTAGAGAAGTATAGAAGCGAAGAACTAACCCTAGCTAGGTCATGCTCTGAC
AGCCTCACTCCTTCCTGTTGTGGGGGC
dot-bracket secondary structure
).....((((((((((((..(((((.((((.((((((((((((.((..((((((....((......))......))))))..)).))))))))))..)).)
))).)))))..))))).)))))))...
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CAGAAGTTCACAAGGGAAAAGGTGAAGCTGCCAGCATGATCTATCTTTGGTTAGAGAAGTATAGAAGCGAAGAACTAACCCTAGCTAGGTCATGCTCTGAC
AGCCTCACTCCTTCCTGTTGTGGGGGC
dot-bracket secondary structure
).....((((((((((((..(((((.((((.((((((((((((.((..((((((....((......))......))))))..)).))))))))))..)).)
))).)))))..))))).)))))))...
SIMILARITIES| miRBase ptc-MIR167d: 1.0E-47 PMRD ppl-miR167a: 1.0E-56 microPC miR167: 1.0E-10 | UniProt no hits RFAM 1MIR167_1: 8.0E-49 | most similar mature miRNAs |
Identical with: ppl-miR167a from PMRD (MNEST051349) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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