ABOUT THIS RECORDspecies: Populus tremula x Populus tremuloides
miRNA family: MIRf459
source: miRNEST
Taxonomy by NCBI:
Populus tremula x Populus tremuloides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTTTGTATTCTTCCACAGCTT miRNA* GCTGTGGGAAGATACAAACAG mismatches: 2 bulges: 0 |
pre-miRNA
TATGTGACCCCCTTTGTATTCTTCCACAGCTTTCTTGAACTGCACCTATTAGATTTATGTTGATGTTGTTGTGCGATATGCCATGACCATATGACATTGT
ATTCATTTTTGCTGCGGTTCAATAAAGCTGTGGGAAGATACAAACAGGATCAAAG
dot-bracket secondary structure
....(((.((..((((((((.((((((((((((.((((((((((.....((((...(((.((((((((((((((.....).)))))).....))))))).
...))).)))).)))))))))).)))))))))))).))))))))..)).)))...
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TATGTGACCCCCTTTGTATTCTTCCACAGCTTTCTTGAACTGCACCTATTAGATTTATGTTGATGTTGTTGTGCGATATGCCATGACCATATGACATTGT
ATTCATTTTTGCTGCGGTTCAATAAAGCTGTGGGAAGATACAAACAGGATCAAAG
dot-bracket secondary structure
....(((.((..((((((((.((((((((((((.((((((((((.....((((...(((.((((((((((((((.....).)))))).....))))))).
...))).)))).)))))))))).)))))))))))).))))))))..)).)))...
SIMILARITIES| miRBase ptc-MIR396b: 2e-68 PMRD ptc-miR396b: 2e-68 microPC miR396: 9e-58 | UniProt no hits RFAM MIR396: 5e-69 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
