ABOUT THIS RECORDspecies: Populus tremula x Populus tremuloides
miRNA family: MIR396
source: miRNEST
Taxonomy by NCBI:
Populus tremula x Populus tremuloides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACAGCTTTCTTGAACTG miRNA* GATCAATAAAACTGGGGGAAGA mismatches: 4 bulges: 1 |
pre-miRNA
GGTGTGTTTGTATGTGACCCTCTTTGTATTCTTCCACAGCTTTCTTGAACTGCACCTATTAGATTTATGTTGATGTTGTTGTGCGATATGCCATGACCAT
ATGACATTGTATTCATTTTTGCTGCGGATCAATAAAACTGGGGGAAGATACAAACAGGAGCAAAGAAAGTTGCTAT
dot-bracket secondary structure
((((..(((...(((...(((.(((((((.(((((.(((.(((.((((.(((((.....((((...(((.((((((((((((((.....).))))))...
..)))))))....))).)))).))))).)))).))).)))..)))))))))))).))).)))..)))...))))..
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GGTGTGTTTGTATGTGACCCTCTTTGTATTCTTCCACAGCTTTCTTGAACTGCACCTATTAGATTTATGTTGATGTTGTTGTGCGATATGCCATGACCAT
ATGACATTGTATTCATTTTTGCTGCGGATCAATAAAACTGGGGGAAGATACAAACAGGAGCAAAGAAAGTTGCTAT
dot-bracket secondary structure
((((..(((...(((...(((.(((((((.(((((.(((.(((.((((.(((((.....((((...(((.((((((((((((((.....).))))))...
..)))))))....))).)))).))))).)))).))).)))..)))))))))))).))).)))..)))...))))..
SIMILARITIES| miRBase ptc-MIR396b: 3e-61 PMRD ptc-miR396b: 3e-61 microPC miR396: 2e-50 | UniProt no hits RFAM MIR396: 8e-62 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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