ABOUT THIS RECORDspecies: Populus tremula x Populus tremuloides
miRNA family: MIR164
source: miRNEST
Taxonomy by NCBI:
Populus tremula x Populus tremuloides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAGAAGCAGGGCACGTGCA miRNA* CATGTGCCTGTCTTCCCCATC mismatches: 5 bulges: 0 |
pre-miRNA
TGCAGAGAAGGTGTGTGTGAGCAAGATGGAGAAGCAGGGCACGTGCATTACTAACTCATGCATACAGAGTGAGAGAGACATTTCTTGCTCGAGTTATGACT
CTTACCTACTATAGATTTTGTTGGCCTCAGTGAGTTAGTTCTTCATGTGCCTGTCTTCCCCATCATGATCACTACCGCACCTATAT
dot-bracket secondary structure
).......(((((((.((((.((.(((((.((((..(((((((((....((((((((((((..(((((((..(((((.(((..(((....)))..))).))
)))..(((...))))))))))..))....))))))))))....)))))))))..)))).))))).)).))))...)))))))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGCAGAGAAGGTGTGTGTGAGCAAGATGGAGAAGCAGGGCACGTGCATTACTAACTCATGCATACAGAGTGAGAGAGACATTTCTTGCTCGAGTTATGACT
CTTACCTACTATAGATTTTGTTGGCCTCAGTGAGTTAGTTCTTCATGTGCCTGTCTTCCCCATCATGATCACTACCGCACCTATAT
dot-bracket secondary structure
).......(((((((.((((.((.(((((.((((..(((((((((....((((((((((((..(((((((..(((((.(((..(((....)))..))).))
)))..(((...))))))))))..))....))))))))))....)))))))))..)))).))))).)).))))...)))))))....
SIMILARITIES| miRBase ptc-MIR164e: 1.0E-72 PMRD ppl-miR164: 7.0E-87 microPC miR164: 9.0E-74 | UniProt no hits RFAM 4MIR164: 2.0E-72 | most similar mature miRNAs |
Identical with: miR164 from microPC (MNEST046101), ppl-miR164 from PMRD |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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